- Overview of all polymorphisms in reference to the roe deer sequence MK103016 [26]. For non-synonymous SNP/ deletion amino acids are given (left side); Haplotype is named after amino acid and PRNP-positions when different to wildtype; 1wt = wildtype/ consensus for European red, roe and sika deer with key-positions T98P168Q226I247; One-letter amino acid abbreviation is used (left side): A = alanine, E = glutamate, I = isoleucine, L = leucine, N = asparagine, P = proline, Q = glutamine, S = serine, T = threonine, Δ = Deletion; Nucleotide sequence for codon position with synonymous SNPs is given (right side): a = adenine, c = cytosine, g = guanine, t = thymine; * synonymous polymorphism in comparison to reference, does not represent an actual SNP but a species-specific alteration compared to roe deer, 1 wt = wildtype T98P168Q226I247; No alteration in the amino acids compared to reference are denoted with “–”; back frame denotes haplotypes solely seen in German red deer; Roe = roe deer; Red = red deer; Sika = sika deer; Fallow = fallow deer.
Veterinary Research